PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 462aa    MW: 51291.6 Da    PI: 5.2357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005091genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-124381244
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                 r +h+e E+rRR +iN++f+ Lrel+P++    ++K +Ka+ L
  Lus10005091 43 RSKHSETEQRRRCKINERFQILRELIPQN----DQKRDKASLL 81
                 899*************************9....8999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-113982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.9824191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-104381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-104381No hitNo description
SuperFamilySSF813834.58E-8298339IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.7E-4299357IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTKSVKSHAE EDYDADDYDS PSSRGEVVKN DGKTTDLKGS AYRSKHSETE QRRRCKINER  60
FQILRELIPQ NDQKRDKASL LLEERLQVYE GSYHGWTQEQ LVPWKNHATS ENLVDNSQIL  120
KDCSAHDGTA GLANVRRSIE SGMETSTVCK ELDHTPGVLP SVQYSMQSGS SMIDAIGRPN  180
ILPTQCLQGS VSGAENMIHQ IHPELWQSQP CITACTAPSS VVNAQELTRG HGSDSISNAY  240
SQGVLSSLAQ ALESSGVDLS ETSISVKIDV GKRAKHGATG LQLSPPKEDE MLRGDCDRVD  300
WISNLLDEIL VNILRLLTHH EAAATSVLSS RWVHLWKSAV TDLTVLDFDG FKLLDNPMEP  360
VNIEDLIILL DADPFDGSSP KSEEMVVEKR FKYISWVNSV LRQHNASKIT KFLISSDLEL  420
RCNSQGDIDR WLEFAISKRV EYLELSLGVK CSFRIQPLAG L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999420.14e-87PREDICTED: transcription factor BIM2-like isoform X2
TrEMBLU5GF361e-84U5GF36_POPTR; Uncharacterized protein
STRINGLus100050910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-39BES1-interacting Myc-like protein 2