PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 462aa MW: 51291.6 Da PI: 5.2357 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3e-12 | 43 | 81 | 2 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h+e E+rRR +iN++f+ Lrel+P++ ++K +Ka+ L Lus10005091 43 RSKHSETEQRRRCKINERFQILRELIPQN----DQKRDKASLL 81 899*************************9....8999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-11 | 39 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.982 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-12 | 41 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-10 | 43 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.10E-10 | 43 | 81 | No hit | No description |
SuperFamily | SSF81383 | 4.58E-8 | 298 | 339 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 2.7E-4 | 299 | 357 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MTKSVKSHAE EDYDADDYDS PSSRGEVVKN DGKTTDLKGS AYRSKHSETE QRRRCKINER 60 FQILRELIPQ NDQKRDKASL LLEERLQVYE GSYHGWTQEQ LVPWKNHATS ENLVDNSQIL 120 KDCSAHDGTA GLANVRRSIE SGMETSTVCK ELDHTPGVLP SVQYSMQSGS SMIDAIGRPN 180 ILPTQCLQGS VSGAENMIHQ IHPELWQSQP CITACTAPSS VVNAQELTRG HGSDSISNAY 240 SQGVLSSLAQ ALESSGVDLS ETSISVKIDV GKRAKHGATG LQLSPPKEDE MLRGDCDRVD 300 WISNLLDEIL VNILRLLTHH EAAATSVLSS RWVHLWKSAV TDLTVLDFDG FKLLDNPMEP 360 VNIEDLIILL DADPFDGSSP KSEEMVVEKR FKYISWVNSV LRQHNASKIT KFLISSDLEL 420 RCNSQGDIDR WLEFAISKRV EYLELSLGVK CSFRIQPLAG L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005091 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999420.1 | 4e-87 | PREDICTED: transcription factor BIM2-like isoform X2 | ||||
TrEMBL | U5GF36 | 1e-84 | U5GF36_POPTR; Uncharacterized protein | ||||
STRING | Lus10005091 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1730 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 7e-39 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10005091 |