PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26162.3 Da PI: 8.4773 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+ll ++v+++G g+W++++++ g++R++k+ ++rw +yl Lus10005079 18 KGPWAPEEDKLLTEYVNLHGEGRWSSVSKCTGLKRSGKSSRLRWVNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5e-15 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg T++E+ + +++++ +G++ W+tIa++++ gRt++++k++w++ Lus10005079 71 RGQLTPQEEGIVIELHAIWGNK-WSTIASYLP-GRTDNEIKNYWRT 114 7888******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.302 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-28 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-20 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-9 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 23.711 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-12 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.36E-9 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MERMMMRGYG VDEQGWRKGP WAPEEDKLLT EYVNLHGEGR WSSVSKCTGL KRSGKSSRLR 60 WVNYLRPGLK RGQLTPQEEG IVIELHAIWG NKWSTIASYL PGRTDNEIKN YWRTQFKKKS 120 SSSLPHNPKR QRKSSSSAVI NDQQMISDSH ANQSPGHDSS TIHDEKMQLD TLLLTDDNCQ 180 KQQQSCSVHN MMNEFEKNQW ADDHLVPAAA SGSGTIIEDW LWSGLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 18 | 122 | 7 | 110 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005079 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113169.1 | 7e-73 | myb-related protein 305 | ||||
TrEMBL | W9SN56 | 2e-71 | W9SN56_9ROSA; Transcription factor | ||||
STRING | Lus10005079 | 1e-170 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 6e-65 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Lus10005079 |