PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10004990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 535aa MW: 59095.5 Da PI: 6.4345 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.7e-17 | 160 | 209 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d+ rk+++lg f+ta Aa+a+++a+ k++g Lus10004990 160 SQYRGVTYYRRTGRWESHIWDC-----RKQVYLGGFDTAHAAARAYDRAAIKFRG 209 78*******************5.....5************************997 PP | |||||||
2 | AP2 | 43.4 | 8.6e-14 | 252 | 302 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Lus10004990 252 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEAEAARAYDKAAIKCNG 302 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-15 | 160 | 218 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-9 | 160 | 209 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.833 | 161 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-17 | 161 | 217 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-30 | 161 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-10 | 252 | 302 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-25 | 252 | 312 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-17 | 252 | 312 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.896 | 253 | 310 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 253 | 310 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-31 | 253 | 316 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-6 | 254 | 265 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-6 | 292 | 312 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 535 aa Download sequence Send to blast |
MWDLNDSPDQ KRAEDISCSY QRTEEDATNK CKRVGSVSNS SSSAVPTPMD DGSEEEAGAV 60 MDGNEIFGFS VVGGEEEYEE EEEEDGEAGV SSPVTRQFFP MEMEGPSVGE VGGGFPRAHW 120 VGVKFCQSES STQRPVVGAG VEMGQQPLKK SRRGPRSRSS QYRGVTYYRR TGRWESHIWD 180 CRKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSIED YQDDLQQMSN LTKEEFVHVL 240 RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEAEAA RAYDKAAIKC 300 NGKDAVTNFD PSIYDDEFNI NTNNTNYSLS GSSNISAADH NLDLSLGNNI ASSSSGMGPN 360 HSCWQNPGLL RPQQMRPYGS SENSSSEEER RRSNETEAMQ LLSQTHIRSP PPNHHMFPPT 420 HNFNSLDFQF RGGNTGGGGR VGSDLSLSPN NNNQHHHYHY HQQWQFSGVG GGSPHPQQVP 480 PPPAASPPEH HNQMYGSSAA AASSGFPHYN IRTPSNTNCL HHKNGSNYSL LRPS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 430 | 439 | RGGNTGGGGR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10004990 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ885939 | 1e-131 | HQ885939.1 Linum usitatissimum clone Contig1868 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079272.1 | 1e-163 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | P47927 | 1e-122 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | E6NU83 | 1e-161 | E6NU83_JATCU; JHL03K20.2 protein | ||||
STRING | Lus10004990 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-102 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10004990 |