PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004840
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 545aa    MW: 58192.6 Da    PI: 8.3904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004840genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166787323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k F r  nL+ H r H
  Lus10004840 67 CEICNKGFQRDQNLQLHRRGH 87
                 *******************88 PP
2zf-C2H2120.00065142164123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Lus10004840 142 WKCDKCSKKYAVQSDWKAHSKTC 164
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-76487No hitNo description
SMARTSM003550.116587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035598107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSNLTTSASG TEASVSSSGH HPPPDISSSA QQPPLKKKRN MPGNPDPDSE VISLSPKSLM  60
ATNRFLCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKDE VVRRKVYVCP EPSCVHHESS  120
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFIRHTAFC DALAEESARG IPPPAAANTF TNPTVPTPTP PSLVPHLHQQ SIPRFNTSSN  240
VETNHILQYP FSPSLKKEQQ QQQSAYSNII NNIDSSGGNF GMLRPPTGAG ACAELPPWIA  300
SCPSSGLLLG SGPPHNNLSS SSSSSPSILS TGTTTAAAEA KGVSPNPSQL GPTTLTLPNF  360
HPASVPHMSA TALLQKAAQM GSSTSSTATT KTAGHPTTTG SRQIHVSTTG ANLDFNFSSS  420
SRVHQQHMVG GGNFFQEMMM NYSMGGATTT AGGFEEDDDE YDGIASFEDA LGGSKSAAGL  480
GDGGSGGGGR SEGMTRDFLG LRPLMSHTDL LSLAGFGHCI NDDAADQRQQ HNSHSQESLK  540
PWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33138199364Zinc finger protein JACKDAW
5b3h_F1e-33138199364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649999.11e-144protein indeterminate-domain 7-like
RefseqXP_024036713.11e-144protein indeterminate-domain 7
RefseqXP_024036715.11e-144protein indeterminate-domain 7
RefseqXP_024036716.11e-144protein indeterminate-domain 7
RefseqXP_024036717.11e-144protein indeterminate-domain 7
TrEMBLA0A067FD521e-142A0A067FD52_CITSI; Uncharacterized protein
TrEMBLA0A1Q3DDM01e-143A0A1Q3DDM0_CEPFO; Zf-C2H2_jaz domain-containing protein
STRINGLus100048400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.15e-95indeterminate(ID)-domain 7