PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10004707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22003.8 Da PI: 6.4947 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.9 | 5.2e-36 | 4 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++Cv+apyf +q +++f +vhk+FGasnv+kll +lp + r+da+ +++y+A ar++dP yG+v+ i++lqqq+++ ++e++ Lus10004707 4 SCGACKFLRRKCMQECVFAPYFSYHQaASHFGAVHKVFGASNVSKLLLRLPVNFRSDAAVTIAYQALARIQDPAYGCVSYIMALQQQVASIQHEIEIF 101 6**********************99978*******************************************************************988 PP DUF260 98 kee 100 ++ Lus10004707 102 SHQ 104 877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.337 | 3 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-35 | 4 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGSSCGACKF LRRKCMQECV FAPYFSYHQA ASHFGAVHKV FGASNVSKLL LRLPVNFRSD 60 AAVTIAYQAL ARIQDPAYGC VSYIMALQQQ VASIQHEIEI FSHQLALNST TPLHSIHASP 120 TSNFETLCSP RPDTTGTHCY QNQQTLQLDN SELTAGSIEF DSKMTSELLP LYGWEDQNPF 180 WNSAHHNSLD ELLKGVDC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 2 | 99 | 9 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 2 | 99 | 9 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10004707 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316271.2 | 2e-73 | LOB domain-containing protein 29 | ||||
Swissprot | Q9LHS8 | 2e-46 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | B9HT79 | 2e-72 | B9HT79_POPTR; Uncharacterized protein | ||||
STRING | Lus10004707 | 1e-148 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 8e-49 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Lus10004707 |
Publications ? help Back to Top | |||
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