PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004630
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 324aa    MW: 35979.8 Da    PI: 5.4231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004630genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.7e-1663112255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L +++eY+++Lq
  Lus10004630  63 RSKHSVTEQRRRSKINERFQILRELIPQC----DQKRDTASFLLEVIEYVRYLQ 112
                  889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1859124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-2261126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.34861111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.05E-1463116No hitNo description
PfamPF000101.0E-1363112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1167117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRGKGNQNHQ EEEEYDEEEL VVGSRKDGEG APSSNVSATT RNSANNTYSN RDGKNSDKAS  60
AVRSKHSVTE QRRRSKINER FQILRELIPQ CDQKRDTASF LLEVIEYVRY LQEKVQKYEG  120
PYQGWPADTT NRTLEQRNSH WQVQNLVGHP QAMNNGSGMV PVFPAKLNES GIAVTSSMME  180
PDSLRDAAMM QQQADLLNKD GYPDLLRHFQ TATLPAVRSD GVDAHHPLQQ PLSDPQTAEC  240
PVTDEELAIE GGTINISSAY SEGLLNALTQ ALQTAGVDLS QANISLQIDL GKRAKDNQNT  300
LPSNQMPIHP RDGTDHVDKR MKM*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490261.11e-108transcription factor BIM2
SwissprotQ9CAA42e-83BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A1S2XJG11e-106A0A1S2XJG1_CICAR; transcription factor BIM2
STRINGLus100046300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-73BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]