PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004353

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 739aa MW: 80770.2 Da PI: 6.5671

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004353	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	335.6	9.1e-103	375	737	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+ l+ + + + + p++ ++ +++ ++ a+k+fsevsP+++f ++t+N Lus10004353 375 LDQLYKAAELVGTGNFTHAQGILARLNQQLSPIGKPLHRAAFYFKEALQLLLMTNNNPVTAPPLPRTPTPFDVIFKMGAYKVFSEVSPLIQFVNFTCN 472 679*************************************************99999999999999999*********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLr 195 qa+lea+e ++r+Hi+Dfdi+ G+QW++++q+L R++gppsl+iT+++sp++++ el ++e+L++fA+e+gv+fe +v+ + + ++++l +r Lus10004353 473 QALLEALEDADRIHIVDFDIGFGAQWASFMQELP-RSRGPPSLKITAFASPSTHHPIELGLMRENLTQFANEIGVSFELDVVNFDslDQNCFSLPIFR 569 *****************************6.789***************************************96662344567778888 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +++Ea+aVn+ + + +++ +l+s +L+lvk+lsPk+vv ++ +d+++ +F +++l+al+ y lf+sl+a +s++ +k+Er+ll+++ Lus10004353 570 ASENEAVAVNFPI--WSCSNQPSALPS----LLRLVKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYIHLFESLDAV-NVTSDALNKIERFLLQPR 660 999****99..666666777777....*****************************************665.5799********** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i++ v + ++ ++ +W+ + +aGF+pv++s+++++qa+++l++++++g++ve++++slvl+W++r+L+s+SaWr Lus10004353 661 IESTVLGRLRA----PDKMPNWKTIFASAGFSPVTFSNFTETQAECVLKRTQVRGFHVEKRHASLVLCWQRRELISASAWR 737 **99998....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.093	348	717	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-100	375	737	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MPFHLEGKGG LDIASIFSQQ EAWKLQHHNS KQEVNSFTEP ISVLHMRRSP SPPTSAFPLS 60 SSFNGGAGGA TTPTAGGDKA VNNDRKDEWA NELQPIPTGG LDIVSSGGER CGLGLDDWEN 120 MLSEPTQEQS LLRWISGGDV DDSSFGLKHL LQSNNNNGSG GNNPLDFDGI VDQGHGGFEG 180 IGGIGGSIGS NLGAFPASGF VGNNGRIGAQ AAAGLVSPSS SSGSGLVNFK ANNTLVNLPA 240 AATLPSGMLY HPQQQVDALD EKPPHLLMNM NPHQQPAPNF FFPLQFPQQD HHHHHQQPQP 300 KRQNSGGNNI MEPNIPQMMP KLPFSDPGHD IFLRKQQQHQ QFPPGVPFLL HQGIQPPLMG 360 KDDPGGGQQQ QHALLDQLYK AAELVGTGNF THAQGILARL NQQLSPIGKP LHRAAFYFKE 420 ALQLLLMTNN NPVTAPPLPR TPTPFDVIFK MGAYKVFSEV SPLIQFVNFT CNQALLEALE 480 DADRIHIVDF DIGFGAQWAS FMQELPRSRG PPSLKITAFA SPSTHHPIEL GLMRENLTQF 540 ANEIGVSFEL DVVNFDSLDQ NCFSLPIFRA SENEAVAVNF PIWSCSNQPS ALPSLLRLVK 600 QLSPKIVVSL DRGCDRSDLP FPQHILHALQ SYIHLFESLD AVNVTSDALN KIERFLLQPR 660 IESTVLGRLR APDKMPNWKT IFASAGFSPV TFSNFTETQA ECVLKRTQVR GFHVEKRHAS 720 LVLCWQRREL ISASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MPFHLEGKGG LDIASIFSQQ EAWKLQHHNS KQEVNSFTEP ISVLHMRRSP SPPTSAFPLS  60
SSFNGGAGGA TTPTAGGDKA VNNDRKDEWA NELQPIPTGG LDIVSSGGER CGLGLDDWEN  120
MLSEPTQEQS LLRWISGGDV DDSSFGLKHL LQSNNNNGSG GNNPLDFDGI VDQGHGGFEG  180
IGGIGGSIGS NLGAFPASGF VGNNGRIGAQ AAAGLVSPSS SSGSGLVNFK ANNTLVNLPA  240
AATLPSGMLY HPQQQVDALD EKPPHLLMNM NPHQQPAPNF FFPLQFPQQD HHHHHQQPQP  300
KRQNSGGNNI MEPNIPQMMP KLPFSDPGHD IFLRKQQQHQ QFPPGVPFLL HQGIQPPLMG  360
KDDPGGGQQQ QHALLDQLYK AAELVGTGNF THAQGILARL NQQLSPIGKP LHRAAFYFKE  420
ALQLLLMTNN NPVTAPPLPR TPTPFDVIFK MGAYKVFSEV SPLIQFVNFT CNQALLEALE  480
DADRIHIVDF DIGFGAQWAS FMQELPRSRG PPSLKITAFA SPSTHHPIEL GLMRENLTQF  540
ANEIGVSFEL DVVNFDSLDQ NCFSLPIFRA SENEAVAVNF PIWSCSNQPS ALPSLLRLVK  600
QLSPKIVVSL DRGCDRSDLP FPQHILHALQ SYIHLFESLD AVNVTSDALN KIERFLLQPR  660
IESTVLGRLR APDKMPNWKT IFASAGFSPV TFSNFTETQA ECVLKRTQVR GFHVEKRHAS  720
LVLCWQRREL ISASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-33	393	737	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004353

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021685795.1	0.0	scarecrow-like protein 27
Swissprot	O81316	1e-126	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2C9WAR1	0.0	A0A2C9WAR1_MANES; Uncharacterized protein
STRING	Lus10004353	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-128	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10004353

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]