PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004315
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 354aa    MW: 39531.4 Da    PI: 4.6167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004315genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102793191055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Lus10004315 279 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 319
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-14269335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.926269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-12274329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-12278323No hitNo description
PfamPF000101.4E-7279319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEFLSSFPDT EFELSRYFSM DHDQEEQADH HYFFHSQVGQ QVSSFPPGDP TTSIDDQYYC  60
SSCNNLMNHS PSSNCSSNNS AAVFDPAAAA VTNYCGDGDY QSFDNFLPEQ EAANLAMDFC  120
VMEEERTSAI MLGNINNPAE TVVDVASMDC QPLKRKLINT QQSPEEEIAA NPSDKKRPRA  180
TKDNKGKKTS GTGNTQWKKN QKCINIVNDN EEESKNNVGI NCGREGQSSS SWNSEEENVL  240
SHEQYANSSN NIMNGDSKAQ KSNRASRGSA TDPQSLYARK RRERINERLR ILQNLVPNGT  300
KVDISTMLEE AVHYVKFLQI QIKLLSSDDM WMYAPIAYNG VDVGLNEKFS SLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100043150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-39ROOT HAIR DEFECTIVE 6-LIKE 2