PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004248
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 358aa    MW: 39912 Da    PI: 10.2859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004248genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.84.9e-13140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
      Lus10004248 140 PWTEDEHKLFLIGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 184
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.424133189IPR017930Myb domain
SuperFamilySSF466891.87E-15136187IPR009057Homeodomain-like
SMARTSM007175.5E-7137187IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.0E-16138187IPR006447Myb domain, plants
PfamPF002494.0E-10140184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10140185IPR009057Homeodomain-like
CDDcd001675.02E-8140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXKKRGL  60
VSLPATAAGY ASADDAVHHS SGTRSERKRG IPSPYIFLCV LILEYRIGGL VRRIAVSQSV  120
IDLLLLTEFD FFSIGRVGIP WTEDEHKLFL IGLQKVGKGD WRGISRNFVK TRTPTQVASH  180
AQKYFLRRLN INRRRRRSSL FDITTDTVTM EQEESHSYNQ ENKKKKKMPS PSPPAEPTNI  240
MSCFPVMPAF TLSANPSSIG TDMPIDNLTL IEGIQSSANL AHPVLHVAPS SSLSRTSSRT  300
ISDVDLNLNS ESPDAGMSLV LNLSLPSDQR TRQHNTASLK MMHRGYGNGD NSTISVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004248
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2V9B04e-36MY1R1_SOLTU; Transcription factor MYB1R1
STRINGLus100042480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.25e-31MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]