![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10004011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 23388.8 Da PI: 7.6602 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 69 | 120 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr+++ +g+++AeIrdp+ n+ +r++lg++ +e+Aa a+++a+ +l+g+ Lus10004011 69 YKGVRRRP-WGKYAAEIRDPKRNN-GARIWLGTYENPEDAALAYDRAAFRLRGA 120 9*******.**********87754.5**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 68 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-35 | 68 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-21 | 68 | 128 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.00E-28 | 68 | 129 | No hit | No description |
PROSITE profile | PS51032 | 23.248 | 68 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-13 | 69 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-13 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-13 | 109 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MESLESIRQH LLDDDSLTDH SASPPFSYSQ SLSFDRVISG AANWSDILSQ VDSKPPPPPV 60 VPRKASGNYK GVRRRPWGKY AAEIRDPKRN NGARIWLGTY ENPEDAALAY DRAAFRLRGA 120 KAKLNFPHLV GSSTDDDHYE PVRVTASRKR CSRRDEESPL SWSSSPMLSF SGSENDSSAG 180 GKRRLTDLVL NVEDYWDSDQ EYIMPRGR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-27 | 68 | 133 | 5 | 69 | ATERF1 |
3gcc_A | 7e-27 | 68 | 133 | 5 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10004011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375127.1 | 5e-45 | ethylene-responsive transcription factor 13 | ||||
TrEMBL | U5FRU2 | 1e-43 | U5FRU2_POPTR; Uncharacterized protein | ||||
STRING | Lus10004011 | 1e-150 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-39 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10004011 |