PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003889
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 318aa    MW: 35061.4 Da    PI: 9.3772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003889genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19127177256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p +   r r++lg+++t+e Aa a+++a+ kl+ge
  Lus10003889 127 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTPEAAAYAYDRAAYKLRGE 177
                  59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.94E-22126186No hitNo description
PROSITE profilePS5103223.156127184IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22127184IPR016177DNA-binding domain
SMARTSM003802.9E-37127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-31127185IPR001471AP2/ERF domain
PfamPF008471.2E-13128177IPR001471AP2/ERF domain
PRINTSPR003671.8E-12128139IPR001471AP2/ERF domain
PRINTSPR003671.8E-12166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEALCGSNNN NPSDMDIGTS LSQLILMGGA GSNTLDSIFS FCHHYPQFSS SSSAMEPLGS  60
SVYLRQRELL QKFSNENQTT TTSSTISFPT SNYSLLESSL QRTTSNNRYG QGTLFPPPSS  120
KASTTKLYRG VRQRHWGKWV AEIRLPQNRM RVWLGTYDTP EAAAYAYDRA AYKLRGEYAR  180
LNFPNLEENS KLGVLDSAKL NSVRSSVDAK IQSICQKLKR ERAKKIAAKK LNDSKTDKNN  240
GRSVVETLPA KVEVNSSSPS LSPSTSTSTS CGNSPKSLET EYMVMVPPKE MDMDGGFSLA  300
RMPSYDPELI WEVLLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-20126184160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003889
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509951.12e-85ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-60ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLB9RCR74e-84B9RCR7_RICCO; DNA binding protein, putative
STRINGLus100038890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]