PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003740
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 190aa    MW: 20720.1 Da    PI: 10.7028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003740genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-183484155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++kGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Lus10003740 34 KKFKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 84
                 59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-193497No hitNo description
PfamPF008473.0E-113584IPR001471AP2/ERF domain
PROSITE profilePS5103221.3113595IPR001471AP2/ERF domain
SMARTSM003801.8E-3235101IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-173596IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-273597IPR001471AP2/ERF domain
PRINTSPR003673.7E-83647IPR001471AP2/ERF domain
PRINTSPR003673.7E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVKTDDHQAP DNNNNNNNMI KSTTKKKSSS MMVKKFKGVR MRSWGSWVSE IRAPNQKTRI  60
WLGSYSTPEA AARAYDAALL CLKGSSAAAP TLNFPTSSYA HYHTYTSAAP VAAPMSPKSI  120
QRIAAAAAAN APTTDIIHQQ PPQPQPSLSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA  180
AAADVRRLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100037401e-107(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-28ERF family protein