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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19288.3 Da PI: 5.0582 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 36 | 86 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f t eAa+a+++a+++l+g Lus10003581 36 CSYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFNTSLEAARAYDRAALSLYG 86 67*****999.**********8...2.359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.44E-28 | 36 | 95 | No hit | No description |
Pfam | PF00847 | 3.6E-14 | 36 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 37 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-30 | 37 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-34 | 37 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 37 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MEQDQQGSKR PKKALVVRSS RKGCMRGKGG PENANCSYRG VRQRTWGKWV AEIREPNRGN 60 RLWLGTFNTS LEAARAYDRA ALSLYGPSVT LNLPEENVGS SSASSSVAAV DIAVHDDSQE 120 VVVKGDDGGE GLVDWMEFAN EFVELDSEWR QHGVGMGSCL NSWDGGGFVE NCPWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 35 | 100 | 12 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003581 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517453.1 | 3e-42 | PREDICTED: dehydration-responsive element-binding protein 2C | ||||
Refseq | XP_021621955.1 | 1e-43 | dehydration-responsive element-binding protein 2G-like | ||||
Swissprot | Q9LQZ2 | 1e-40 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A2C9VCB8 | 3e-42 | A0A2C9VCB8_MANES; Uncharacterized protein | ||||
STRING | Lus10003581 | 1e-127 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10003581 |
Publications ? help Back to Top | |||
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