PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003500

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 359aa MW: 39184 Da PI: 7.011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003500	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.6e-08	253	293	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y++ L Lus10003500 253 ARKRRERISERIRVLQKLVPGG-----TKMDTASMLDEAANYLNFL 293 69****************87.....8*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.97	244	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	249	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-5	253	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDGSLEASAG GAWDHEYYPS SPWTNLSNLN YAIINSSHGH NQDLFLNEGA PQPLNSNYKG 60 QEQGTIMDKC SSGGSLDSLD CLLSATNSNN TTDHTVEDDD QGISLLFSSE SFWNNNIINI 120 SSSTTLQAAA VYSGGSSQHH HRTVVGNKRK IVNIQQDGND KNNPQPKPRK TRRYSPPAEA 180 AGSSSFNSSN HNINFQSVSH SEPDQEAIAQ MKEMMYRAAA FQPVNMGAEE VEAGRKPKRK 240 NVRISTDPQT VAARKRRERI SERIRVLQKL VPGGTKMDTA SMLDEAANYL NFLRSQVKAL 300 EHNLPPSSSS SSSSTNFSFF TNYISISNNG GGGSNSMLLP MQANSLQNPD NLLHHHQL*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDGSLEASAG GAWDHEYYPS SPWTNLSNLN YAIINSSHGH NQDLFLNEGA PQPLNSNYKG  60
QEQGTIMDKC SSGGSLDSLD CLLSATNSNN TTDHTVEDDD QGISLLFSSE SFWNNNIINI  120
SSSTTLQAAA VYSGGSSQHH HRTVVGNKRK IVNIQQDGND KNNPQPKPRK TRRYSPPAEA  180
AGSSSFNSSN HNINFQSVSH SEPDQEAIAQ MKEMMYRAAA FQPVNMGAEE VEAGRKPKRK  240
NVRISTDPQT VAARKRRERI SERIRVLQKL VPGGTKMDTA SMLDEAANYL NFLRSQVKAL  300
EHNLPPSSSS SSSSTNFSFF TNYISISNNG GGGSNSMLLP MQANSLQNPD NLLHHHQL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	256	KRKNVRISTDPQTVAARKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003500

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215737.1	5e-64	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	5e-57	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1J3CPV8	6e-63	A0A1J3CPV8_NOCCA; Transcription factor bHLH87 (Fragment)
STRING	Lus10003500	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10003500

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]