PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003488
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 381aa    MW: 42623.1 Da    PI: 7.1432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003488genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13194240455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Lus10003488 194 DHIMAERKRREKLSQRFIALSSIVPGL-----KKMDKASVLGDAIKYVKHLQ 240
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17194258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-18194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-13195244No hitNo description
SMARTSM003534.7E-15196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEDYKFFQHC DTINSEFEQN TVAAAALLPG EALQPSFSSE SYSSYSAGFH HQSTAPNTTI  60
FTPPPAAISR SSINETSQTK TFDDHRPNKQ QRKTNSWSSS VTTDHQQHID FSSNPHPQML  120
SFDNSKSTTS SLQPLYKNGL ELTVKPKEEA DMLFHSTTNT RMMSDPSENT IYAPMGMKTK  180
PFSSLTRTPS HAQDHIMAER KRREKLSQRF IALSSIVPGL KKMDKASVLG DAIKYVKHLQ  240
EKIKQLEEQT KKRTVESVVL VKRCQLPMDE DSNSSSCEDD NNNSSKGEKK GCWDSTLPEI  300
EAKASERDVM IRIHCEKQPG VVAKLLYEVE SLNLSIVNSS VLPFGNSTVD ITVIAQMDGE  360
ISMTVKEVVK NLRLAFLKFM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13194249863Transcription factor MYC2
5gnj_B5e-13194249863Transcription factor MYC2
5gnj_E5e-13194249863Transcription factor MYC2
5gnj_F5e-13194249863Transcription factor MYC2
5gnj_G5e-13194249863Transcription factor MYC2
5gnj_I5e-13194249863Transcription factor MYC2
5gnj_M5e-13194249863Transcription factor MYC2
5gnj_N5e-13194249863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003488
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024179628.11e-103transcription factor bHLH18-like
RefseqXP_024179629.11e-103transcription factor bHLH18-like
RefseqXP_024179631.11e-103transcription factor bHLH18-like
RefseqXP_024179632.11e-103transcription factor bHLH18-like
SwissprotQ9T0727e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P6RPI11e-102A0A2P6RPI1_ROSCH; Putative transcription factor bHLH family
STRINGLus100034880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-55bHLH family protein