PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10003471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 368aa MW: 40479.1 Da PI: 10.4041 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.7 | 2.7e-15 | 175 | 220 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+++L+ Lus10003471 175 HNQSERRRRDRINQKMKALQKLVPNA-----NKTDKASMLDEVIDYLRQLR 220 *************************8.....6*****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-18 | 167 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.758 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-19 | 173 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.21E-15 | 175 | 224 | No hit | No description |
Pfam | PF00010 | 7.4E-13 | 175 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-16 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 368 aa Download sequence Send to blast |
MNNNRSWINY EVAELTWEKG QPSSNGLGSS LSPKQTWAST RPNNDTLESI VHQAASLKPP 60 TSPPSNPTSD SKWRPVAASS LKRSRTESTV ANDGKRIWDS NRSNDVENAA SYRDGNGGAG 120 RSATSSRGSG GTVMTWPLPA TYQTKPDDFD DKETTTSTRS LSSIFSKRSR ASDVHNQSER 180 RRRDRINQKM KALQKLVPNA NKTDKASMLD EVIDYLRQLR AQVEMMNNIR SMKPPPQPQM 240 VMMVPNIDQM PLFAGLGMGM NPLASSSSSS SIHMRHLLPP SAFMANTSPP FLLHHSATNM 300 NYNNTCKSSG EANLSSLNAA QSSMDVELYL KNMAAMYQQQ QQQVHNSRAN AIGAATHHSS 360 HTVQRDK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 178 | 183 | ERRRRD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10003471 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10003471 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00050.1 | 9e-28 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10003471 |