PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003255
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 586aa    MW: 64697.6 Da    PI: 8.6193
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003255genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.16.8e-07268330163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  eke +r rr   NRe+Ar   +R++a +eeL++k+++L  eN+ Lk e e   ke + l+s +
  Lus10003255 268 EKEARRLRRILANRESARQTIRRRQALCEELTRKAASLALENENLKREKELVLKEQQFLESTN 330
                  799*******************************************99998888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-7268332IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.68270333IPR004827Basic-leucine zipper domain
CDDcd147021.04E-13273322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDRSNWAVSW RAGDRSDTHP PPQPQNWSYA RSPRVYVPSR HVSTYSCALL VLGRKAGERA  60
LGGPKWWSGF AEFETWQAEI HGAGTLHRIA TALAGMTRGA FPLSLWAKPA TTMDLERAVD  120
WTSNSNSETS SSSSTFYLPA DRMVRIELEA AEALADLAHL AKRRECSSGG GGGSPSKWGS  180
KGKRAKKRVK SESPPHDSAL NPVFDSSSSS FKHPPPDQPA ADFQQKMCES VVINHVKPEQ  240
DAHIHSPYAR SFPSYGGGRS RQNLTEAEKE ARRLRRILAN RESARQTIRR RQALCEELTR  300
KAASLALENE NLKREKELVL KEQQFLESTN KQLKTQMAHN KALKAEEEEE EAGVELKPSW  360
FHMPFHQPTN CQMIFYNQHP LSQLCWPSII QSSNAVQSQQ EIHENRTTSL CLMSCPWFLP  420
LADSSANGQN AVSVDDQCCG SSSSQPLAAP LKLKPEAGSS PEVRLINDLN EFPMGERGGE  480
YSGKQNEVFL TPASVSCVST TPSSGVKSEI GLQSCSGAGA DAYHQHNKAS QPDACGYPEK  540
VCDDPFSFTN KKPVDAAAAT MARRRRKELT RLKHLHGARQ CRMNC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1562567RRRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533547.14e-99uncharacterized protein LOC8273730
TrEMBLB9T5M89e-98B9T5M8_RICCO; DNA binding protein, putative
STRINGLus100032550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64002834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.13e-33bZIP family protein