PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003208
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 414aa    MW: 44709.5 Da    PI: 8.003
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003208genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-383392362
       zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++ ++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s
  Lus10003208 33 KEGVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRPS 92
                 57799****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-243384IPR003851Zinc finger, Dof-type
PfamPF027019.0E-333590IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.913690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDTAQWPQGI VVKPSNGTTN PQKSAGGKIN GVKEGVNCPR CNSTNTKFCY YNNYSLTQPR  60
YFCKTCRRYW TEGGTLRNIP VGGGSRKNKR PSSSSASSFS SVSPNTSKKL LPGLVSSSSN  120
YSAAPSLPSS TKIAAPQNPK MMMMNQEEGH DLNGQMVFPR SFTELMHNHH HQVQPTIAVD  180
DHHDRNNQVS ALELLNRSSG GLNSNSGSFM HSHDHGHGQG QDAGFDNYTS GLSFLQHQDF  240
KPSSSSSSLS FSLDGVGLGR PPLLFPFQDL KQVPTIASNG KANDDHDDHG RAAAADSSGY  300
WTGMLGGGSC RRYFSVSSSS SSLYSSRERE SGDLHGWKWR LRLGQTVLDF TVAVYLELKS  360
NVDMTVFENS APVVCTGETI GFFMPCDTSG ASVMESEPCA LHGSDEVGIG RRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303678.15e-63dof zinc finger protein DOF4.6 isoform X1
TrEMBLA0A2P2JZL41e-61A0A2P2JZL4_RHIMU; Uncharacterized protein MANES_02G005000
STRINGLus100032080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.13e-34Dof family protein