PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003207
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 344aa    MW: 36797.6 Da    PI: 8.8325
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003207genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.38.4e-3955114362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  ++ ++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s
  Lus10003207  55 KEGVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRPS 114
                  6789*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2655112IPR003851Zinc finger, Dof-type
PfamPF027016.8E-3357112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9158112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKNGKAFTQS TAVAVVLKLK GRDCHITPLY GIVVKPSNGT TNPQKSAGGK INSAKEGVNC  60
PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR YWTEGGTLRN IPVGGGSRKN KRPSSSNSTS  120
FSSSSSLSSN TAKQLLPGLV SSSSNNYSAA PSLPSSTKIA APQNPKMMMM NQEEGQDLNG  180
QLAFPRSFTE LMHHHHQVQP SITVDDHDHQ DRNNQVSALE LLNRSSGGLN INSGSFMHSH  240
DHGHGQDAGF DNYTSGLSFL QHQDFKPSSS SCSSLSFSLD GVGDGINGNG GLGRPPLLFP  300
FEDLKQVPTT AGNGKANDDH DDHGRSAADS SGYWTGMLGG GSW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452064.13e-61dof zinc finger protein DOF4.6 isoform X2
TrEMBLA0A2P2JZL42e-61A0A2P2JZL4_RHIMU; Uncharacterized protein MANES_02G005000
STRINGLus100032070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.46e-36Dof family protein