PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003013
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 536aa    MW: 59628 Da    PI: 6.0134
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.49.9e-26289344156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                  k +++Wt +LH++Fv+aveqL G ++A+P++il+lmkv+gLt+++v+SHLQ kYR++
  Lus10003013 289 KMKVDWTADLHRKFVQAVEQL-GVDQAIPSKILQLMKVEGLTRHNVASHLQqKYRMH 344
                  5689*****************.****************************549**86 PP
2Response_reg233.9e-09201211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  +++ le+ +y +va++ + +eal  + +k   +++ ++ +      G+++l    e++++lp i+ +  +  +++ +++ +Ga+
   Lus10003013  20 VLLLDEDINSAAEIKSQLESMDY-SVAAFCNEKEALLAFSDKPesFHVAIVEVT----VGMTFL----ESAKDLPTIMTSNINCLSTMMKCIALGAM 107
                   7889999999999**********.*************99776667******954....345554....4455788999888888************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
   Lus10003013 108 EFLHKPLSEDKLRN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-1416129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.8E-1416138No hitNo description
SMARTSM004480.009218123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.13219127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-620122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.78E-821126No hitNo description
PROSITE profilePS5129412.754286345IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-24287346IPR009057Homeodomain-like
SuperFamilySSF466892.87E-15288346IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-23289345IPR006447Myb domain, plants
PfamPF002492.8E-6292339IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MVCTANDLSE WKDFPKGLKV LLLDEDINSA AEIKSQLESM DYSVAAFCNE KEALLAFSDK  60
PESFHVAIVE VTVGMTFLES AKDLPTIMTS NINCLSTMMK CIALGAMEFL HKPLSEDKLR  120
NIWQHVVHKA FNAGQESLNP KKDSVVSTLQ LKVETEEAEN LPPVDDENNS DSNKYPAPST  180
PQLKQGSRLL DDGDCQDHTN CSTEQEGESK SVETTFAMAE TSVQVDTENL TDGKALKEED  240
DLSTGAKTEN LKSLCPQDSH DKPDSSNEDR SKSSSLNTTS GVTKANRKKM KVDWTADLHR  300
KFVQAVEQLG VDQAIPSKIL QLMKVEGLTR HNVASHLQQK YRMHKRHILP KSEDRRWPVQ  360
HKDQPKRSYY SHKPPIMAYP PSYHQQQHSN HAFPPPMWGA AAAGTHHVQM WGPPSHSPWT  420
SLTDSWHWKP YPPLHADTWG CPVMPPQMPY SYLPQNQPGF HGAGISDNQC SKPQNSFDLQ  480
PAEEVIDKVV KEAISKPWLP LPLGLNPPST DSVLDELCKQ GIISTVPCND GSHSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-13287343358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368445.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440369.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440375.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440380.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440382.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-124APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
STRINGLus100030130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-126ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]