PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002912

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ERF

Protein Properties

Length: 186aa MW: 20300.6 Da PI: 6.5201

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002912	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+Wv+eIr+p +r++lg+f+tae Aa+a+++a+ + g Lus10002912 5 KKYRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDTAEAAARAYDRAAVHMSG 55 59***999.******8.....334*******************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.95E-20	5	63	No hit	No description
SuperFamily	SSF54171	3.92E-21	6	65	IPR016177	DNA-binding domain
SMART	SM00380	4.9E-39	6	69	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-11	6	52	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.748	6	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.3E-33	6	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.5E-11	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.5E-11	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MVQSKKYRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE AAARAYDRAA VHMSGRNAKT 60 NFPASSSDDD DNASLGELLN AKLRKCCDTS ASSMTCLRLD SSDSSHIGVW QKRPAGGPRS 120 SSWVMRVRLG GGTGGGSDSD HPPPAPVLER EESSSSLSSS SGSEMVEEKE EDRIAMQMIE 180 ELLEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	7e-17	3	63	2	63	ATERF1
3gcc_A	7e-17	3	63	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002912

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024166721.1	4e-67	ethylene-responsive transcription factor SHINE 2
Swissprot	Q3E958	8e-60	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A2P6PXT6	1e-65	A0A2P6PXT6_ROSCH; Putative transcription factor AP2-EREBP family
STRING	Lus10002912	1e-133	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF576	33	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	1e-46	ERF family protein

Link Out ? help Back to Top
Phytozome	Lus10002912

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]