PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002895
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 829aa    MW: 89245.5 Da    PI: 7.6703
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002895genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.32e-15444483241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+CnCkk+kClk+YC+Cfa+g++Cse C+C++C+Nk e
  Lus10002895 444 DCKRCNCKKTKCLKLYCDCFASGNYCSEACSCQGCFNKPE 483
                  689**********************************976 PP
2TCR50.73.5e-16531569139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN 
  Lus10002895 531 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 569
                  589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-14443484IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.468444571IPR005172CRC domain
PfamPF036388.0E-11446481IPR005172CRC domain
SMARTSM011143.1E-17531572IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11533568IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MDSPEVTKTT TAASSATVTS PIVVQESPFS NYVSNLSPIG PVKSSRISQG YAHLSSPPLV  60
FTSPHVVPQR EASLLRRLQC PQTSSSQTAK VGGKAFADIP PDLEKCDSYF GRRFIIGSQK  120
DSDRISCTKE LRDSPSGCVD EYLSEAVDAE CADCVDSTGL IRETSADLIE SSECGLVNLQ  180
EKKLQSGTDK EVINFEIRPT DTGHDRSTGL PPSDDCNNST SQMQLDLVSN EVQSGNCSVK  240
ACQLHRGVSR RCLQFGEGQG VGKGSVNVMD SGLPFSAGME SSKLSDLGIA APTRKTQMIN  300
LSRVLASIRP PNDNAKTILS ISKPSGIGLH LNSILNASPM GCTGSETINS QSVDNEACSA  360
KPSSLVDKFH GTVGDRILEN QAAPVSVSYT TDSFHTTKSL TIIQSLESFE PNTTPQEKRP  420
LDSEQNESSP KKKRKKLTPD GGDDCKRCNC KKTKCLKLYC DCFASGNYCS EACSCQGCFN  480
KPEYEDTVLQ TRQLIESRNP LAFAPKVVHH ASRVPAAIGA DVNRTTPSSA RHKRGCNCKK  540
SMCLKKYCEC YQANVGCSSG CRCEGCKNVF GMKNGFAIAE EITNSTTSKD LIENTADDKV  600
VYSDDRVPAE LYDAQSPAPF TPQLQLSERN RDGAPKSRLF PTKYLPSPLS DISTLQSVEK  660
SVDVLSVGSS GQEMEYSISG IGDDVCDRNA SSSSASTTME LANISSRPLQ LLRWRGSPIT  720
PMPNLAEIGK SIKGPDSVQK MSDLLMADDS PEILKETCSP IQSVKATSPN KKRVCPPHAH  780
PKSIHGFGSF SSGSFRSGRK FVLKSVPSFP PLTPCLGSKV NKNKEQEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1944856914121Protein lin-54 homolog
5fd3_B4e-1944856914121Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429436PKKKRKKL
2431435KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002895
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100028950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-66Tesmin/TSO1-like CXC domain-containing protein