PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002629

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 411aa MW: 45552.2 Da PI: 7.7241

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002629	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQk+Rl Lus10002629 45 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKFRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.175	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-16	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-22	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	5.1E-9	47	97	IPR001005	SANT/Myb domain
Pfam	PF14379	6.1E-25	148	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MYHHHHQGQN MHSASRIPIP SERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFVE 60 AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKFRLS KNLHGQANSG SNKMGGLAVA 120 VERVPETTQT HTTPNNSSIA PQTNKSLHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AQDTLGNQNL GAVGLEAAKV QLSELVSKVS TQCLTSAFSE LKELQGMCPQ 240 HIQTNQRTDC SIDSCLTSCE GPQKEQEMHN IGMGLRPYNG GNSLLEAKEL PDPNMLRQSD 300 IRWRDDVKEN NNMFLTSLGR TAERTVFPTE RSASDLSMSV GLHVDRGNAN GRLSEGRYKG 360 RSDNDMFPDQ NNKKSDSLPY IGKRLDLNSH DEMDATSGCK QLDLNGFSWN *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MYHHHHQGQN MHSASRIPIP SERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFVE  60
AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKFRLS KNLHGQANSG SNKMGGLAVA  120
VERVPETTQT HTTPNNSSIA PQTNKSLHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQDTLGNQNL GAVGLEAAKV QLSELVSKVS TQCLTSAFSE LKELQGMCPQ  240
HIQTNQRTDC SIDSCLTSCE GPQKEQEMHN IGMGLRPYNG GNSLLEAKEL PDPNMLRQSD  300
IRWRDDVKEN NNMFLTSLGR TAERTVFPTE RSASDLSMSV GLHVDRGNAN GRLSEGRYKG  360
RSDNDMFPDQ NNKKSDSLPY IGKRLDLNSH DEMDATSGCK QLDLNGFSWN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002629

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525443.1	0.0	myb-related protein 2
Swissprot	Q9SQQ9	1e-152	PHL9_ARATH; Myb-related protein 2
TrEMBL	B9SHH4	0.0	B9SHH4_RICCO; Transcription factor, putative
STRING	Lus10002629	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-155	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10002629

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]