PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002578
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 489aa    MW: 53330.2 Da    PI: 6.5519
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002578genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-061353337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 e  C+ ++++ + l+C+ ++  lC  C ++ H+       H
  Lus10002578 13 EIPCDFCSDQLAVLYCRADSAKLCLFCDQHVHSAnllsrkH 53
                 568***************************99555565556 PP
2zf-B_box23.89.3e-085698341
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                  ++C+++++++++  C +++  lC+dC +  H +    H++++
  Lus10002578 56 SQICDNCSSEPVSVRCATDNLVLCHDCDSDAHGScavsHNRTS 98
                 689*****************************55999998876 PP
3CCT63.27.9e-22440483144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RY eK+ktR+++K+irYesRKa+Ae+R RvKGrFvk++
  Lus10002578 440 RGNAMQRYMEKKKTRRYDKHIRYESRKARAETRTRVKGRFVKAT 483
                  7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-111158IPR000315B-box-type zinc finger
PROSITE profilePS501199.3281158IPR000315B-box-type zinc finger
CDDcd000218.25E-71458No hitNo description
PROSITE profilePS501199.8555499IPR000315B-box-type zinc finger
CDDcd000214.84E-65899No hitNo description
SMARTSM003360.455999IPR000315B-box-type zinc finger
PROSITE profilePS5101714.465440482IPR010402CCT domain
PfamPF062035.7E-16440482IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MANPIQEGGG GAEIPCDFCS DQLAVLYCRA DSAKLCLFCD QHVHSANLLS RKHVRSQICD  60
NCSSEPVSVR CATDNLVLCH DCDSDAHGSC AVSHNRTSLE GFSGCPSSLE LASLWGFDLA  120
NKEKSVLDRH DWNEGDNGGD WMALIERWMG LSQDGSGLPD FTVPIGNGPM FGGEGQTASF  180
KRQGSPPPSC GRYKQVIYKQ LVELRKRDLV PGGETPAPGT PSRSGWEGAD LASGNDEVGA  240
NHHQCLQQEE HRAPFSTLLN LPAPAGPEPE PKPIITDHFH GQNTVWNSNN KINKNNTNPT  300
ANSTTQIWDF NLGQSRNEDD KSGLEVGYGA VNHAGFTMKD ISELIKESAL DDTRLLGEMY  360
HLNSSSFGHH DDMVSFSTTS MSQSGGAISE SNNLKMQNTS KVGRKKTLNT KFGEFSVGTA  420
GTEASAVGNK LDTEMLAQNR GNAMQRYMEK KKTRRYDKHI RYESRKARAE TRTRVKGRFV  480
KATEAPES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8849611e-144HQ884961.1 Linum usitatissimum clone Contig792 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623776.11e-151zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A2C9VBX21e-150A0A2C9VBX2_MANES; Uncharacterized protein
STRINGLus100025780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.28e-95B-box type zinc finger protein with CCT domain