PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10002481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | Trihelix | ||||||||
Protein Properties | Length: 60aa MW: 7217.61 Da PI: 10.8935 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.6 | 7.9e-19 | 2 | 52 | 13 | 63 |
trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 +r e+++++ ++k++k lWe +++km+e+gf rsp+qCk+kw+nl +ryk+ Lus10002481 2 IRAELDRTFMETKRNKLLWEVIASKMKEKGFLRSPEQCKCKWKNLVTRYKR 52 7999**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 4.96E-18 | 1 | 52 | No hit | No description |
Pfam | PF13837 | 3.8E-14 | 5 | 52 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MIRAELDRTF METKRNKLLW EVIASKMKEK GFLRSPEQCK CKWKNLVTRY KRDLRTVNV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10002481 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104264.2 | 1e-26 | trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 4e-23 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | W9RYU5 | 3e-25 | W9RYU5_9ROSA; Trihelix transcription factor GT-3b | ||||
STRING | Lus10002481 | 8e-36 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-25 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10002481 |
Publications ? help Back to Top | |||
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