PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002399

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 396aa MW: 44061.3 Da PI: 8.2807

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002399	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.6	3e-14	241	294	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++ ++ Lus10002399 241 RRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNEELERKQAEIMQMQQN 294 79************************************9998888888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.0E-13	237	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	239	290	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-12	241	293	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-10	241	290	No hit	No description
CDD	cd14707	9.38E-25	241	295	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-13	241	289	No hit	No description
PROSITE pattern	PS00036	0	244	259	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MGSHFNFSSF GNPTNSPLVR QQSSVYSLTF DELQNTWGGS IGKDFWSMNM DELLKNICTA 60 EETSTIGVVE EASTGNLQRQ GSLTLPRTLS QKTVDEVWKD FIKENSVNAA ASKNDVTRPR 120 VQLSCSNLGL NVGGIRPPPH QQQHQQSFHR SRNQPQQQQQ QPLLFPKPAT VPFASPVHNK 180 VNGGRSSAAG VTVATASPAS QGSPDVLSRS DADTSSVSPV PYVFSSRGRR PNTALEKVVE 240 RRQRRMIKNR ESAARSRARK QAYTLELEAE VAKLKELNEE LERKQAEIMQ MQQNQVSKSS 300 SLCESFLLYY NSSNPSLICR CHEKGVHLDA RIFYRSEFYC DFAVLGENEA SMGRQAALLE 360 EDTDGAMVES QNQLDIVSKH HVRDSTIIIA YKYLC*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MGSHFNFSSF GNPTNSPLVR QQSSVYSLTF DELQNTWGGS IGKDFWSMNM DELLKNICTA  60
EETSTIGVVE EASTGNLQRQ GSLTLPRTLS QKTVDEVWKD FIKENSVNAA ASKNDVTRPR  120
VQLSCSNLGL NVGGIRPPPH QQQHQQSFHR SRNQPQQQQQ QPLLFPKPAT VPFASPVHNK  180
VNGGRSSAAG VTVATASPAS QGSPDVLSRS DADTSSVSPV PYVFSSRGRR PNTALEKVVE  240
RRQRRMIKNR ESAARSRARK QAYTLELEAE VAKLKELNEE LERKQAEIMQ MQQNQVSKSS  300
SLCESFLLYY NSSNPSLICR CHEKGVHLDA RIFYRSEFYC DFAVLGENEA SMGRQAALLE  360
EDTDGAMVES QNQLDIVSKH HVRDSTIIIA YKYLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002399

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018805792.1	1e-84	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
Refseq	XP_018805793.1	1e-84	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
Swissprot	Q9M7Q5	2e-59	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A2P5XFD6	1e-88	A0A2P5XFD6_GOSBA; Uncharacterized protein
STRING	Lus10002399	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.3	3e-31	abscisic acid responsive elements-binding factor 3

Link Out ? help Back to Top
Phytozome	Lus10002399

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]