PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002381

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 346aa MW: 37179.4 Da PI: 7.8482

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002381	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.8e-39	61	121	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+st+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +++ Lus10002381 61 QDQALKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKSSSKK 121 6899****************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	55	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-33	62	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGLTSLQVCM DSPADWLLQG TTMVDDVESG LLDPSNGGDM LMVACSRQPA AMMERRLRPP 60 QDQALKCPRC ESTHTKFCYY NNYSLTQPRY FCKTCRRYWT KGGTLRNIPV GGGCRKSSSK 120 KSNSNKNKSI LTSASSSLTS SPTSSPSPAH HHQLLHGHHF NSLLGNMVLE NRAPPVDFME 180 GKLEGLGGGL SGNYNYDFVM GNGGSSFNDH GGVSVGGLGG RGGQSGHFHG LSSNLSIMES 240 CQRLMLPYEA SEDRTIGDVK PAAAKLLSLD SWQDHHHHHH GGGGINVVGK ESGFGYFNNS 300 MNGTLLDQSW INNEVSTSNQ HHHAMMNGGY NGSGSATSSS MLHNN*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGLTSLQVCM DSPADWLLQG TTMVDDVESG LLDPSNGGDM LMVACSRQPA AMMERRLRPP  60
QDQALKCPRC ESTHTKFCYY NNYSLTQPRY FCKTCRRYWT KGGTLRNIPV GGGCRKSSSK  120
KSNSNKNKSI LTSASSSLTS SPTSSPSPAH HHQLLHGHHF NSLLGNMVLE NRAPPVDFME  180
GKLEGLGGGL SGNYNYDFVM GNGGSSFNDH GGVSVGGLGG RGGQSGHFHG LSSNLSIMES  240
CQRLMLPYEA SEDRTIGDVK PAAAKLLSLD SWQDHHHHHH GGGGINVVGK ESGFGYFNNS  300
MNGTLLDQSW INNEVSTSNQ HHHAMMNGGY NGSGSATSSS MLHNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002381

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021292203.1	4e-79	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	4e-47	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A061FUJ4	5e-75	A0A061FUJ4_THECC; F-box family protein isoform 2 (Fragment)
TrEMBL	A0A061FV52	7e-75	A0A061FV52_THECC; Dof-type zinc finger DNA-binding family protein isoform 1
STRING	Lus10002381	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	5e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	Lus10002381

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]