PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10002213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19628.3 Da PI: 8.1877 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 49 | 89 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P K++ +++Le+A++Y+k L Lus10002213 49 ARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEQAINYVKFL 89 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.307 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-14 | 45 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-12 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-12 | 46 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-13 | 46 | 93 | No hit | No description |
Pfam | PF00010 | 8.7E-8 | 49 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDYFTTMAST ASSSSTKQKK TKQPKNPNPN PNRPSRSVRL STDPQSVAAR ERRHRISDRF 60 KILQSLVPGG SKMDTVTMLE QAINYVKFLK TQIVIHETLM NQPQLPPNNN YSEDETTSFM 120 FTDQVAMLPD LSNYNSIPGE GSGLLYEVPG GGCSSQMMMY PLPECFLDDG GMRYM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10002213 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092808.1 | 1e-37 | transcription factor bHLH140 | ||||
TrEMBL | W9R2D3 | 3e-36 | W9R2D3_9ROSA; Uncharacterized protein | ||||
STRING | Lus10002213 | 1e-128 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 5e-28 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Lus10002213 |