PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002207
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 311aa    MW: 34800.7 Da    PI: 7.1611
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002207genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.1e-3265118255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtpeLH++Fv+ave+LGG+e+AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  Lus10002207  65 PRLRWTPELHHSFVKAVERLGGQERATPKLVLQLMNVHGLSIAHVKSHLQMYRS 118
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.79161121IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-3061119IPR009057Homeodomain-like
SuperFamilySSF466893.23E-1564120IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-2365120IPR006447Myb domain, plants
PfamPF002491.2E-966117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQEFSHGGVS KGSSSQVDEA SSDELPGDGP GSCSSNSTVE EEEEVEKVGK TTSSSVRPYV  60
RSKLPRLRWT PELHHSFVKA VERLGGQERA TPKLVLQLMN VHGLSIAHVK SHLQMYRSKK  120
TDDSNQVISE QHRHLLESGD RNIYNLSQLP MLQGFNTALR RHYPTYNVNK PHFNDDINRR  180
RFLYSKLTGP PPVPDRNING TSSWKYFSTT TTTNNIINSN FQPATTPFIT SGTHLKRKVA  240
TSDDDDGKID LELSLKLKQP KCGDDNDDIV SVEESRRPPE VRLLESELSL SLCSQSSEHE  300
KRTSTLDLTI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1966120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1966120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1966120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1966120357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1966120458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677557.17e-66putative Myb family transcription factor At1g14600
RefseqXP_021677558.17e-66putative Myb family transcription factor At1g14600
TrEMBLA0A251K5N08e-63A0A251K5N0_MANES; Uncharacterized protein
STRINGLus100022070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-49G2-like family protein