PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002205
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 538aa    MW: 59987.5 Da    PI: 5.0777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002205genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS119.44.3e-371485377374
         GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
                  + Aea+++++ ela+ +  r+se +sp+g+ + Rl  y  + + ++              +++s    ++   al++f+ ++ +  ++h++aN+aIle
  Lus10002205 148 AYAEAMENKQPELAEMITGRISEKVSPTGEINDRLLYYTFQPIDKQSEY----------LKQES---GKNFDRALEAFYRIFHYGMVAHFAANSAILE 232
                  679************************************9998877665..........33333...5666678899********************* PP

         GRAS 105 avege..ervHiiDfdisqGlQWpaLlqaLasRpeg.....................ppslRiTgvgspesg....skeeleetgerLakfAeelgvp 175
                   + +   + +Hi+Dfdi++G+QWp+L+ aLa+++++                     + ++++T+++  +++    ++++ e+t+++L+++A+++gv+
  Lus10002205 233 TTLSLnpDVLHIVDFDIGEGVQWPPLILALAQQQRQipqinqniqnsnfyydailptTTMIKLTAINWRSEEslnsNRRRFESTKKQLQDYASSFGVT 330
                  9877667899*********************877555678889999********98788*******9977778999999******************* PP

         GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl....sPk.vvvvveqeadhnse.....sFlerflealey 263
                  ++++ +   ++++l  ++L+   + +l  n++  l ++ +++ + +   +e+L l ++l     P+ ++++++ + + ns       F   f + + +
  Lus10002205 331 MRIEEM---EIQEL-KRSLKKGGKRCLTFNCMWGLPHMGRRRSKAQ--VSEFLGLARELlgqpGPNgLLTFSDGNGNNNSDsnndcGFGGFFESYMAH 422
                  ****97...77777.46788888***************95555554..59********95533344589999999887766566668988889999** PP

         GRAS 264 ysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka.akqaklllrkvksdg...yrve...e 353
                  y a+++s+e ++p+   e+r  +E  ++++ i +     g++    +e +e+ ++ +++ GF+pv+++  a ++ ++  + + + +g   y v    e
  Lus10002205 423 YRAVLESMEWSFPARLsEARLAMEYLFVAPLIHSSEWG-GKW---GEEMAEEGSKLVSRLGFRPVTITAGAgVAGVRGGVWEGEREGesqYGVRiggE 516
                  **********9997654999999999887777665333.333...577778899*************9887467788888777766666677778899 PP

         GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                  +++++vl W++ pLv vSaWr
  Lus10002205 517 NQNEMVLEWRGTPLVKVSAWR 537
                  9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.664116510IPR005202Transcription factor GRAS
PfamPF035141.5E-34148537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MIQQKPFQLS FDHDQYPNGN YHHVSMDTPP PINFSSFQTT VPQSNDWFDY SAADDKLSNL  60
AVPVDLPPLE LDEFEPLKPA EIEDVTAWLS GRGGDGGFGA AAQPPPPLLQ ANNHNAAATV  120
FVGGQQLTIP TVGVPINSRM SVTHLTKAYA EAMENKQPEL AEMITGRISE KVSPTGEIND  180
RLLYYTFQPI DKQSEYLKQE SGKNFDRALE AFYRIFHYGM VAHFAANSAI LETTLSLNPD  240
VLHIVDFDIG EGVQWPPLIL ALAQQQRQIP QINQNIQNSN FYYDAILPTT TMIKLTAINW  300
RSEESLNSNR RRFESTKKQL QDYASSFGVT MRIEEMEIQE LKRSLKKGGK RCLTFNCMWG  360
LPHMGRRRSK AQVSEFLGLA RELLGQPGPN GLLTFSDGNG NNNSDSNNDC GFGGFFESYM  420
AHYRAVLESM EWSFPARLSE ARLAMEYLFV APLIHSSEWG GKWGEEMAEE GSKLVSRLGF  480
RPVTITAGAG VAGVRGGVWE GEREGESQYG VRIGGENQNE MVLEWRGTPL VKVSAWR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002205
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SKY91e-121B9SKY9_RICCO; Transcription factor, putative
STRINGLus100022050.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.12e-06GRAS family protein