PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002185
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 290aa    MW: 31258.3 Da    PI: 6.2869
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002185genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.6e-11154197548
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                  kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Lus10002185 154 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 197
                  8999********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-14150214IPR004827Basic-leucine zipper domain
PfamPF077163.7E-9152199IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622152204IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-13154205No hitNo description
SuperFamilySSF579593.3E-11154208No hitNo description
CDDcd147035.55E-23155205No hitNo description
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNSSTSPPPG AGTTGGPSVT DPWPSSRSQC STTVITTEIS RDSTTSSSCQ CSPSTTCRTA  60
LPPEAVGIPA AGGGGNPASS SNPSSPSDHN SINDEKEAIP AAVGCGGFGQ QERKMVMKMD  120
ADEEQSPSES DYSQQTTPSN GNNSNNSDRI VDPKRVKRIL ANRQSAQRSR VRKLQYISEL  180
ERSVTSLQAE VSVLSPRVAF LDHQRLLLNV DNSALKQRIA ALAQDKIFKD AHQEALKREI  240
ERLREVYYQQ QQNLKNLDSN NNSSSSSGQA NEQPNITAEK EQQQQLLQV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525146.17e-81basic leucine zipper 61
SwissprotQ9M2K41e-68BZP61_ARATH; Basic leucine zipper 61
TrEMBLB9SGM72e-79B9SGM7_RICCO; Transcription factor RF2a, putative
STRINGLus100021850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.14e-61bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]