PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002028
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 180aa    MW: 19368.3 Da    PI: 8.4904
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002028genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-1587147161
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  +ke kr +r+ +NR++A+  R+RKka++ eLe +vk +e++N++L ++l++l++e + l++
  Lus10002028  87 DKENKRLKRLLRNRVSAQQARERKKAYLSELEVRVKDMEKKNSELEERLSTLQNENQMLRQ 147
                  5899****************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-1387151IPR004827Basic-leucine zipper domain
PfamPF001707.8E-1488147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.25489152IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-1391148No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-1691150No hitNo description
CDDcd147041.92E-1792143No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQEQATSSAA ANSLPSSSER SSSSALQLEV KEGMESDDEI RRVPEMGGEP AGTSGSGRNA  60
AATVGKDRGG HQGSGEGTRK RGRSPADKEN KRLKRLLRNR VSAQQARERK KAYLSELEVR  120
VKDMEKKNSE LEERLSTLQN ENQMLRQVTM QAVGVEGQNC GGGGSMAANE NERDEAVSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021670971.11e-70transcription factor HY5-like isoform X3
RefseqXP_021670972.11e-70transcription factor HY5-like isoform X4
SwissprotQ9SM501e-59HY5_SOLLC; Transcription factor HY5
TrEMBLA0A067KF351e-68A0A067KF35_JATCU; Uncharacterized protein
TrEMBLB9RP681e-68B9RP68_RICCO; Transcription factor hy5, putative
STRINGLus100020281e-124(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.17e-47bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]