PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001979
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 310aa    MW: 33351.9 Da    PI: 6.4362
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001979genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31e-14206256155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+  +       +k+++lg f+t+ eAa+a+++a+ +++g
  Lus10001979 206 SKYRGVTLHK-CGRWEARMGHlL----ANKYIYLGLFDTEVEAARAYDKAAMEYNG 256
                  89********.7******66633....35**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.5186171IPR001471AP2/ERF domain
SMARTSM003801.5E-14124177IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-9134172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-11135171IPR001471AP2/ERF domain
CDDcd000181.56E-20206265No hitNo description
SuperFamilySSF541712.81E-15206265IPR016177DNA-binding domain
PfamPF008472.4E-9206256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-15207265IPR001471AP2/ERF domain
PROSITE profilePS5103215.817207265IPR001471AP2/ERF domain
SMARTSM003803.0E-22207271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDALVPDQDL HPDVDHDDVN SLSGAATSDS SSAVADDQAF PPNDAVAAAS SPAFIFDIFR  60
NENGTPGKRP TRPAPRRSLP GSHRSTERGM EELNLAATAP KPWLKLSDPS ATGGTSAVSA  120
GGGRCGGAAA EEEDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF SLNDYDEDMK  180
QMKEMSKEEF VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGHLLANK YIYLGLFDTE  240
VEAARAYDKA AMEYNGNAAV LTNFQPMHPH INTSNGKGQQ QHVHVDAIAG RRVCKLGAAA  300
ESTSKYCWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001979
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042969.12e-77PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_011043690.12e-77PREDICTED: floral homeotic protein APETALA 2-like isoform X2
TrEMBLA0A2K1ZBQ16e-75A0A2K1ZBQ1_POPTR; Uncharacterized protein
TrEMBLB9HLZ75e-75B9HLZ7_POPTR; Uncharacterized protein
STRINGLus100019790.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-63related to AP2.7