PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001885
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 270aa    MW: 29569.3 Da    PI: 6.6321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001885genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-1192138354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L +++  +k+L
  Lus10001885  92 KSHSEAERRRRERINAHLATLRGLVPGT-----EKMDKATLLAEVISQVKML 138
                  58*************************8.....8*********999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66389138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-992138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1393143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1393141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1295144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.4E-4178221No hitNo description
CDDcd048733.88E-8178244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFADDEYFYN SYNPRNSSPF GYSGKFADLD HHLPPLPEAF DEFYSRGGSS SSSASQALVL  60
DNEKGELVKA PATRVAAGKK EVSEAKALAA LKSHSEAERR RRERINAHLA TLRGLVPGTE  120
KMDKATLLAE VISQVKMLKQ NAMESSKGHL IPMDNDEVKV VVEPSLNHGS TTLSFRASLC  180
CEYRPELMSE IRQAIESLQL KLLDAEMSTL GSWVKNVFIL TKCGGIEDNA EAQSGLASCI  240
HEALSSVVEK GYASAEYSTR KRFSTRRDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001885
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596198.15e-91transcription factor bHLH30-like isoform X2
TrEMBLA0A2C9U9M11e-89A0A2C9U9M1_MANES; Uncharacterized protein
STRINGLus100018850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.14e-34basic helix-loop-helix 32