PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10001885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 29569.3 Da PI: 6.6321 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.5e-11 | 92 | 138 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P +K++Ka+ L +++ +k+L Lus10001885 92 KSHSEAERRRRERINAHLATLRGLVPGT-----EKMDKATLLAEVISQVKML 138 58*************************8.....8*********999988877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.663 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-9 | 92 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-13 | 93 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-13 | 93 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-12 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.4E-4 | 178 | 221 | No hit | No description |
CDD | cd04873 | 3.88E-8 | 178 | 244 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MFADDEYFYN SYNPRNSSPF GYSGKFADLD HHLPPLPEAF DEFYSRGGSS SSSASQALVL 60 DNEKGELVKA PATRVAAGKK EVSEAKALAA LKSHSEAERR RRERINAHLA TLRGLVPGTE 120 KMDKATLLAE VISQVKMLKQ NAMESSKGHL IPMDNDEVKV VVEPSLNHGS TTLSFRASLC 180 CEYRPELMSE IRQAIESLQL KLLDAEMSTL GSWVKNVFIL TKCGGIEDNA EAQSGLASCI 240 HEALSSVVEK GYASAEYSTR KRFSTRRDG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 97 | 102 | ERRRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10001885 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596198.1 | 5e-91 | transcription factor bHLH30-like isoform X2 | ||||
TrEMBL | A0A2C9U9M1 | 1e-89 | A0A2C9U9M1_MANES; Uncharacterized protein | ||||
STRING | Lus10001885 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G25710.1 | 4e-34 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10001885 |