PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001844

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 474aa MW: 52579.7 Da PI: 7.4348

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001844	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	88	142	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Lus10001844 88 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 142 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-32	85	143	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.347	85	145	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-16	87	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	88	143	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	90	140	IPR001005	SANT/Myb domain
Pfam	PF14379	4.8E-22	182	221	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MFHGHVKKPS TTITTASGGH HNNNNNNSGG SGGMMMNSHH SHHQHQHHHQ QQQHHHDRST 60 GGGGGMSSSA GCHVQQGDSG LVLTTDPKPR LRWTVELHER FVDAVTQLGG PDKATPKTIM 120 RVMGVKGLTL YHLKSHLQKF RLGKQPHKEL NDHSLKDAAS ASDLQRNLPS SSGMIGRSMN 180 EMQMEVQRRL HEQLEVQRHL QLRIEAQGKY MQSMLEKACQ TLAAGEQQQQ QQHHTYSSST 240 TSNPNNSSSK LASDHHHHHH NPHHGMHNSS SVEHLVGMKD MAGQASLNFP PVQDLNIYGN 300 MDHGLMMSSS SNNNNNNNNN SNININHDGA ALCLGSNNNS NNKKRPNPYN TTSTITKSSN 360 SSLMWSSDDL RLQEGINGGT DEDDGDHHED DDDQLQIHMD QHLQDSHMLY DSSKQLLGGE 420 HGLMLMGPTP TDHRQQHHNQ QLPHQLLTKS KFDHHAGNKL DRHSPGRATH SLV*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MFHGHVKKPS TTITTASGGH HNNNNNNSGG SGGMMMNSHH SHHQHQHHHQ QQQHHHDRST  60
GGGGGMSSSA GCHVQQGDSG LVLTTDPKPR LRWTVELHER FVDAVTQLGG PDKATPKTIM  120
RVMGVKGLTL YHLKSHLQKF RLGKQPHKEL NDHSLKDAAS ASDLQRNLPS SSGMIGRSMN  180
EMQMEVQRRL HEQLEVQRHL QLRIEAQGKY MQSMLEKACQ TLAAGEQQQQ QQHHTYSSST  240
TSNPNNSSSK LASDHHHHHH NPHHGMHNSS SVEHLVGMKD MAGQASLNFP PVQDLNIYGN  300
MDHGLMMSSS SNNNNNNNNN SNININHDGA ALCLGSNNNS NNKKRPNPYN TTSTITKSSN  360
SSLMWSSDDL RLQEGINGGT DEDDGDHHED DDDQLQIHMD QHLQDSHMLY DSSKQLLGGE  420
HGLMLMGPTP TDHRQQHHNQ QLPHQLLTKS KFDHHAGNKL DRHSPGRATH SLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-18	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	88	144	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001844

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018819.1	1e-107	myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	5e-92	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1R3I5R9	1e-104	A0A1R3I5R9_9ROSI; Uncharacterized protein
STRING	Lus10001844	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-89	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10001844

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]