PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001754
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 453aa    MW: 50208.1 Da    PI: 7.2833
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001754genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-3393147155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Lus10001754  93 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 147
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.34790150IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-3290148IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1692148IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2393148IPR006447Myb domain, plants
PfamPF002491.6E-795145IPR001005SANT/Myb domain
PfamPF143794.5E-22187226IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MFHGHVKKPS TTITTASGGH HHNHNNNNNN SGGSGGMMIN SHHSHHQHQH HHHQQQQHHH  60
DRNTGGGGGM SSSSSGCHVQ QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT  120
PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKELNDHSL KDAASALDLQ RNLPSSSGMM  180
GRSMNEMQME VQRRLHEQLE VQRHLQLRIE AQGKYMQSML EKACQTLAAG EQQHHTYSSS  240
TTSNPNNSSS KVASDHHHHH NPHHGMHNSS SVEHLVGMKD MAGQAALNFP PVQDLNIYGN  300
MDHGLMMSSS SNNNNNSNNI NHDGAALCLG SNNSNSNNKK RPNPYNTTAS TITKSSLMWS  360
SDDLRLQEGI NGGTDEDEDD GDHHEDNDQL QIHMDQQHLQ DSHILYDSKQ LIGGEHGLML  420
MGPSPTDHRQ QHHSQLPHQL LTKSKFDHHA GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-1893149157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1893149157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1893149157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1893149157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1893149258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001754
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211463.11e-110myb family transcription factor APL
SwissprotQ9SAK51e-94APL_ARATH; Myb family transcription factor APL
TrEMBLM5WFT91e-108M5WFT9_PRUPE; Uncharacterized protein
STRINGLus100017540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49643252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.24e-91G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]