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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 14347.8 Da PI: 10.0224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r++lg+f+taeeAa+a+++a+ l+g Lus10001298 38 RFVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEEAARAYDEAACLLRG 87 789******.7*********55....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.62E-30 | 37 | 94 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-20 | 38 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.585 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 38 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-28 | 38 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-14 | 38 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MGRKRKVAAA VAATDQTSSG SENDLQVNDI DRRTRNKRFV GVRQRPSGRW VAEIKDTVQK 60 IRVWLGTFDT AEEAARAYDE AACLLRGSNT RTNFWPSSNP SSSSSSHHQY GHPASTAAFC 120 SNYTFCNFGG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 38 | 103 | 14 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 37 | RTRNKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001298 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483176.1 | 1e-40 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A0D2RVI0 | 2e-39 | A0A0D2RVI0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A392MIL7 | 1e-39 | A0A392MIL7_9FABA; Ethylene-responsive transcription factor (Fragment) | ||||
STRING | Lus10001298 | 6e-93 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-24 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Lus10001298 |