PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 345aa MW: 38376.9 Da PI: 6.3712 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+ ++ G +Wk+ ++ g++R++k+c++rw +yl Lus10001093 18 KGPWTAEEDEKLVHFITNNGHTNWKSLPKLAGLNRCGKSCRLRWTNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E+ l+++++ lG++ W++Ia +m+ gRt++++k++++++ Lus10001093 71 RGKFSDDEERLIINLHSVLGNK-WSRIATHMP-GRTDNEIKNYYNTH 115 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 12 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.01 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.02E-10 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.844 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 69 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 71 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-11 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MARPPCCGED QDDNKVKKGP WTAEEDEKLV HFITNNGHTN WKSLPKLAGL NRCGKSCRLR 60 WTNYLRPDIK RGKFSDDEER LIINLHSVLG NKWSRIATHM PGRTDNEIKN YYNTHIRKKL 120 LQMGIDPQTH KPRTDHLQLN QFLNLSQLIG AAHQLTTIFN NNNNMVPQQN LFTQHAAAPP 180 AAAQAQVQVM QNLLNLLNPT SLPLSSMSTQ DEMLLSRILN PSSSSSHHQE LFCNQFLNPV 240 QQPAFCAARE GGLPGLVSAE SGSPEGSSSS LKGEMMAGIT KMEGGNNNNN IYQTNYSSSD 300 GGFSSSPAED GHEYEEWEKL LMMDDFTSTG GGFFSSWKDD DLLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 18 | 120 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001093 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8GWP0 | 2e-71 | MYB39_ARATH; Transcription factor MYB39 | ||||
STRING | Lus10001093 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-70 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Lus10001093 |