PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001068
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 349aa    MW: 38982.7 Da    PI: 4.8396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001068genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102743141055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Lus10001068 274 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 314
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-14264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.926264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-12269324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-11273318No hitNo description
PfamPF000101.3E-7274314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEFLSSFPDT EFELGRYFSM DHDQEQQADH HHFFLSQVGQ QLSSFPSGDT TSTDDQYYCS  60
SWNNLMMNHS PSSNCSSNNS AAAFDPAAAA VTNYCGGDYQ NFDRFLPDHE AAMNFCAMEE  120
ERTSAFMLGN INNSAETVLD VASIDCQPLK RKFNTHQSSE EEIAANPSDK KRPRATKDNK  180
GMKSSGNGNT QWKKDQKCIN IVNVNEEESK NNNVGINCGR EGQSASSCNS EEENGLSQEQ  240
YSNNNINGDS SNKAQKSNRA SRGSATDPQS LYARKRRERI NERLRILQNL VPNGTKVDIS  300
TMLEEAVHYV KFLQIQIKLL SSDDMWMYAP IAYNGVDVGL NEKFSNLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7XHI93e-52BH084_ARATH; Transcription factor bHLH84
STRINGLus100010680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-40bHLH family protein