PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000963
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 384aa    MW: 43017.2 Da    PI: 8.064
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000963genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.51.7e-1818104183
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                  +Wt++e+ +Li+a+r+++ +++rg+l++++W++v++++    +     +s++qC++k+e+++kry+++k++  +   +  s++ +f 
  Lus10000963  18 CWTREETVELIKAYRDKWFAVNRGNLRAADWDSVAAALadspAPSDPPKSAVQCRHKIEKIRKRYRAEKQRCVNFPGRFFSSWDLFP 104
                  8*************************************66555555689********************987666555556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-1817109No hitNo description
PROSITE profilePS500906.1681979IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSSAVAADPS SRKVPPPCWT REETVELIKA YRDKWFAVNR GNLRAADWDS VAAALADSPA  60
PSDPPKSAVQ CRHKIEKIRK RYRAEKQRCV NFPGRFFSSW DLFPLLDSME IGSIGSKQEK  120
DVDKSNNNNN NDHYEGLEEP DLDLDPDLVF RARKFGKVSG GFNERVVDYG NKYDQNSVSV  180
AFMPNDYGRF DRKIGGNNSN LGFDSDYGSG GFSRKMGQLQ RDDMMNGVNE ERDRFGKKVV  240
EEWGYGSSRI RVKNHIQADR NGFGSGNTNG VDGGGVSSKG KDPVAEVVSA IKMLREGFVM  300
VEEMKMDMAM EIEKMRMGME LKHNQMLIEM QQDIVDAIAK AHANKKTNNI KKKKRKMDVS  360
SSPNSHRNNG ESEIAATEFE TID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000963
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605142.17e-98uncharacterized protein LOC110609684
TrEMBLA0A2C9WCE62e-96A0A2C9WCE6_MANES; Uncharacterized protein
STRINGLus100009630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137971421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-27Trihelix family protein