PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000707
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 266aa    MW: 28412.7 Da    PI: 8.3025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000707genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.3e-38201201100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dCv+ pyf++eq p++fa++hk+FGasnv+kll +lp  +r++a+ ++ yeA+ar+rdPvyG+v+++++lq+q++ l+a++ ++
  Lus10000707  20 PCGACKFLRRKCAADCVFTPYFCSEQgPARFAAIHKVFGASNVSKLLLHLPAANRSEAVVTISYEAQARLRDPVYGCVAHVFALQHQVAYLQAQIMQM 117
                  7*************************99******************************************************************9999 PP

       DUF260  98 kee 100
                  k++
  Lus10000707 118 KAQ 120
                  887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.54519121IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-3720118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASSGSGTSS SGGGGGAGTP CGACKFLRRK CAADCVFTPY FCSEQGPARF AAIHKVFGAS  60
NVSKLLLHLP AANRSEAVVT ISYEAQARLR DPVYGCVAHV FALQHQVAYL QAQIMQMKAQ  120
LAQNSNYVMD SPRNNNNATT SPYSSWQENN HNCTTCTTTT TTTGTVPSAE WGAAVPAVAT  180
NYCYSFNPPP NTVSPQSSPE SVDYSGRGGG TAAPEDYYYL TQQNIKYRDQ EAPALMFGQP  240
KTTRKRPYNN ELGDLQALAL KMMGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-35161217111LOB family transfactor Ramosa2.1
5ly0_B2e-35161217111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000707
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021653516.12e-82LOB domain-containing protein 16
TrEMBLA0A1R3I7C42e-80A0A1R3I7C4_COCAP; Uncharacterized protein
STRINGLus100007070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-67lateral organ boundaries-domain 16