PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10000531

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 334aa MW: 35158.8 Da PI: 6.9141

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10000531	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	36.5	6.9e-12	240	296	2	58
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58 ++lL cA a+++g+++++q+lL l+el+s +g++++Rlaay ++AL ++l+ +++ Lus10000531 240 EQLLNPCAAAITAGNFSRVQHLLYVLHELSSLTGSANHRLAAYGLRALTHHLSTTTN 296 689*************************************************98333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.246	213	333	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-9	240	296	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MTSEGSHPNS QLHDPTAAAA ASDHMLDCWL ESVSYLPSFL DDTNDINSYP WWIPPDEFGH 60 DPLLPPSTIS NPSHHHHHHQ LQQNHQLNHG GGTTSTTTMA AATPQSMPSP DIISTFQTIP 120 TSHLIQQENT ITKYDHPQAS NLPRKRKLPD VPVPRPSPVN IPHVKKSQSQ SQSQSCDDHH 180 QDSSSGGGGG DSSAVIESGG GTVAASGCGG GVKKANGGKK GEKQNPLCAG GSNKEGRWAE 240 QLLNPCAAAI TAGNFSRVQH LLYVLHELSS LTGSANHRLA AYGLRALTHH LSTTTNTSPA 300 AAMGPPGAPN FAATEARVLQ TTASEIATQI LRG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	PRKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10000531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10000531	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6874	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	1e-19	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10000531