PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000411
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 279aa    MW: 30914.7 Da    PI: 8.5592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000411genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
      Lus10000411 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.71.3e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEd+l+++++++lG++ W++Ia +++ gRt++++k++w+++
      Lus10000411  67 RGNFTDEEDQLIIKLHNLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.901961IPR017930Myb domain
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-2913108IPR009057Homeodomain-like
PfamPF002495.3E-161461IPR001005SANT/Myb domain
CDDcd001671.94E-111661No hitNo description
PROSITE profilePS5129428.48762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2865116IPR009057Homeodomain-like
SMARTSM007179.4E-1866114IPR001005SANT/Myb domain
PfamPF002497.2E-1767111IPR001005SANT/Myb domain
CDDcd001672.24E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR AHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDQLIIK LHNLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSHG  120
IDPQTHRPLN EKPTGAVNAT TVAPPAKPAQ LDFKTNNGIP DFEFQTVKAE SVEENNCSSS  180
GMTTDEELPQ RPTATAAGNR SQRDELNLEL TIGISPYPQP SSASSGNSAE SKLDQFGPIT  240
QFSGAAKDVC VCWQLGFSGK CRCQYSGAGE RQSRFQHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30141167108B-MYB
1h8a_C8e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000411
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022773527.11e-117transcription repressor MYB6-like isoform X1
RefseqXP_022773528.11e-117transcription repressor MYB6-like isoform X2
RefseqXP_022773529.11e-117transcription repressor MYB6-like isoform X2
RefseqXP_022773530.11e-117transcription repressor MYB6-like isoform X2
SwissprotQ388511e-102MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9T8B71e-114B9T8B7_RICCO; R2r3-myb transcription factor, putative
STRINGLus100004110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-103myb domain protein 6