PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000368
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 415aa    MW: 46418.9 Da    PI: 8.4703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000368genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-15126220198
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                  f+ v+ ps+v++++ + lp +f++++ +  k +     l+ ++g +W+v++  r +++r ++ +k W  Fv+ n L++gD++ F+l++  +e  ++v 
  Lus10000368 126 FLIVMQPSYVGTTK-INLPPDFFRSNfK-GKDG--VTGLRVLDGSVWKVEY--RVTKDRaIFTAKSWIPFVRKNSLEVGDVCAFELVQGgTESIFNVV 217
                  7789999*****98.***********63.3333..46677888********..666666477789********************9976566667777 PP

                  EE- CS
           B3  96 vfr 98 
                  +fr
  Lus10000368 218 IFR 220
                  776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-21118221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-20119220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-19124220No hitNo description
PROSITE profilePS5086311.857125222IPR003340B3 DNA binding domain
PfamPF023621.3E-13126220IPR003340B3 DNA binding domain
SMARTSM010194.8E-13126217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSATEIDYKT KEASRVVKLE CGVVDASDVP SNDQLLSPKT REKPLLRSSQ PHKLRRTTNQ  60
NSETVVCCGS GSSVVKQRKR AMTSDHTSDN QAKEAMSWRQ KPLTKAEKAR VLARATATFK  120
SENPSFLIVM QPSYVGTTKI NLPPDFFRSN FKGKDGVTGL RVLDGSVWKV EYRVTKDRAI  180
FTAKSWIPFV RKNSLEVGDV CAFELVQGGT ESIFNVVIFR DTKDRTNVSK PKKDPTSSHA  240
RTAYDHITCL RNNGVDNLDL DHRVNWFCRN NCRKIYGSLA TLVGLPIPVG IDDLTWTLLK  300
YAEYDAEEES ESVVSGIEAT EAQSYMKREI ALHGMHECFE PLEEFCTGRD IKLTELGVER  360
LVLPAAPTVL NTWTGSFGFS KMTDSERLRF ADSFFLNFPG AILCHKLLSC VTSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100003680.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-11related to vernalization1 1