PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000312
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 459aa    MW: 50010 Da    PI: 4.7212
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000312genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.6e-36431352103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ + ++sws+++nsfvv+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i 
   Lus10000312  43 FLSKTYDMVDDPACDAVVSWSSTNNSFVVWNPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKGIT 130
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
   Lus10000312 131 RRKPA 135
                   *9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-4035126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.79E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-6139132IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDGAAGATKG GGGGGSPDAS TSGGGGAAAP VPMPSQSNAP PPFLSKTYDM VDDPACDAVV  60
SWSSTNNSFV VWNPPEFSRD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR  120
GQKHLLKGIT RRKPAQQQAQ PSNGQTSSSV GAACVEVGKF GLEKEVERLK RDKNVLMQEL  180
VRLRQQQQAT DGQLQTMTQR LQGMEQRQQQ MMSFLAKAMQ SPGFLAQFVQ QQNENTRRIS  240
ESSKKRRLKQ DGVTENENES SGGVSDGQQI VKYQPLMNEA AKSMLRQIMK LDGSSKSESY  300
NDIFDGFSSS DGGKSSAHRV SGVTLQEVPP TSGLPDHLAS GSVPIPTTDV MMPDLDHIPE  360
MVQESIADLQ GGGFMEPDTG NDCFPPMMNG TIPLDIGIIS ADPDDNFDVL LDHDFCWDVL  420
QSPVPDEIDP SNVVKPMENM DQLTQQMGLL SPEAKKLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-262413217129Heat shock factor protein 1
5d5v_B4e-262413217129Heat shock factor protein 1
5d5v_D4e-262413217129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604617.10.0heat shock factor protein HSF8 isoform X1
SwissprotQ9LQM71e-149HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A251LLT00.0A0A251LLT0_MANES; Uncharacterized protein
STRINGLus100003120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-125heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]