PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000208
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 204aa    MW: 22660.1 Da    PI: 9.1412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000208genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000453592255
                 HHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS
          HLH 22 eLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55
                  L++l+P+a                         ++    +Ka++L ++++Y+++L+
  Lus10000208  3 ALQKLVPNANkvlgitykvvfflkqpfqgltqcFTSVDQTDKASMLDEVIDYLRQLR 59
                 5788888866688888888888888888888877777889***************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.858158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-7167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-749IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-73686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKALQKLVPN ANKVLGITYK VVFFLKQPFQ GLTQCFTSVD QTDKASMLDE VIDYLRQLRA  60
QVEMMNNIRS MKPPQPSQMM MMVPNIDQMP LFGLGMGMNP LASSSSSIHM RHLLPPSAFM  120
TNTTPPFLLH HSTANMNYNN TCKSSGEANL SSLNAAQSSM DVELYLKNMA AMDQQQQQEV  180
HNRSTNAIGA ASHHSSHTIQ RDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100002081e-149(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-09bHLH family protein