PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 22660.1 Da PI: 9.1412 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00045 | 3 | 59 | 22 | 55 |
HHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 L++l+P+a ++ +Ka++L ++++Y+++L+ Lus10000208 3 ALQKLVPNANkvlgitykvvfflkqpfqgltqcFTSVDQTDKASMLDEVIDYLRQLR 59 5788888866688888888888888888888877777889***************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.858 | 1 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-7 | 1 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-7 | 4 | 9 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-7 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MKALQKLVPN ANKVLGITYK VVFFLKQPFQ GLTQCFTSVD QTDKASMLDE VIDYLRQLRA 60 QVEMMNNIRS MKPPQPSQMM MMVPNIDQMP LFGLGMGMNP LASSSSSIHM RHLLPPSAFM 120 TNTTPPFLLH HSTANMNYNN TCKSSGEANL SSLNAAQSSM DVELYLKNMA AMDQQQQQEV 180 HNRSTNAIGA ASHHSSHTIQ RDK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000208 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10000208 | 1e-149 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 7e-09 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000208 |