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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 25042.6 Da PI: 9.0276 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 9e-14 | 44 | 89 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YIk+L Lus10000037 44 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYIKEL 89 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.746 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-19 | 43 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.34E-13 | 43 | 94 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-19 | 44 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-11 | 44 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-17 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVDSDVDQSD LEPSVIKEVV VAEPEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF 60 YALRAVVPNV SKMDKASLLG DAISYIKELS SKLQLTESSK KELERQVESI RKQQPDYHQE 120 YNKKACSNEF GGKTKAIEMD IDVKIIGWDA MIRIQCSKEN HPAARLMAGL KELDLDVHHA 180 SVSVVNDLMI QQATVKMGSR FYTQEELRLA LSNKVGGDTR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_B | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_E | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_F | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_G | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_I | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_M | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
5gnj_N | 6e-34 | 38 | 111 | 2 | 75 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 33 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000037 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076236.1 | 1e-109 | transcription factor MYC2 isoform X1 | ||||
Swissprot | A0A060KY90 | 1e-102 | MYC1_SOLLC; Transcription factor MYC1 | ||||
TrEMBL | A0A0A6ZA38 | 1e-111 | A0A0A6ZA38_9ROSI; Transcription factor MYC2 (Fragment) | ||||
STRING | Lus10000037 | 1e-162 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2938 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 2e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000037 |
Publications ? help Back to Top | |||
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