PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Lsa019421

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 341aa MW: 38093.7 Da PI: 8.5462

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684159	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.3e-55	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel++ yL +k+++++++ ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++ l Lsa019421 12 LPPGFRFHPTDEELITSYLVNKISDSSFTG-RAITDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSnTSDL 110 79***********************999.89***********99999************************************9856777 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grap+gekt+Wvmheyr+ Lsa019421 111 VGMKKTLVFYRGRAPRGEKTNWVMHEYRV 139 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-63	8	160	IPR003441	NAC domain
PROSITE profile	PS51005	60.431	12	160	IPR003441	NAC domain
Pfam	PF02365	4.5E-28	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEGEVNKEAD KLPPGFRFHP TDEELITSYL VNKISDSSFT GRAITDVDLN KCEPWDLPGK 60 AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNSNTSDL VGMKKTLVFY 120 RGRAPRGEKT NWVMHEYRVH AKSAFRTSKD EWVVCRVFQK TAGGKKYPSS SHSRGMINPY 180 NHEIGPASGI HLPPQIMSTD PSYQFPVGLG RSYMSNADLA EFSRVYRGSN NMPLHQTQMN 240 YPDGGGAECF TISGLNLNLR GSTSTQMRAM AQQQPSAATS SLPPQLQEDV TSSMLINSGG 300 LGNEQAMGYV GEMSSNSNGL GNNRFMTMDQ CADLDNYWAP F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	12	166	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	12	166	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	12	166	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	12	166	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	12	166	20	174	NAC domain-containing protein 19
3swm_B	4e-55	12	166	20	174	NAC domain-containing protein 19
3swm_C	4e-55	12	166	20	174	NAC domain-containing protein 19
3swm_D	4e-55	12	166	20	174	NAC domain-containing protein 19
3swp_A	4e-55	12	166	20	174	NAC domain-containing protein 19
3swp_B	4e-55	12	166	20	174	NAC domain-containing protein 19
3swp_C	4e-55	12	166	20	174	NAC domain-containing protein 19
3swp_D	4e-55	12	166	20	174	NAC domain-containing protein 19
4dul_A	3e-55	12	166	17	171	NAC domain-containing protein 19
4dul_B	3e-55	12	166	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023768560.1	0.0	NAC domain-containing protein 79
TrEMBL	A0A2J6L2Z9	0.0	A0A2J6L2Z9_LACSA; Uncharacterized protein
STRING	VIT_04s0008g02710.t01	1e-151	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-113	NAC domain containing protein 38