PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa019205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 410aa MW: 46257.1 Da PI: 6.2636 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 344 | 389 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Lsa019205 344 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 389 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 338 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 341 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.70E-12 | 342 | 393 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-15 | 343 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-13 | 344 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 344 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
MDSDLHHHHH QQQLQQPQQQ NMNSGLTRYR SAPSSYFSNL ISNGIYGDDD SDPFFNPRVS 60 TTETDQILSR FTSSTTAVVA GSGGDSTSQQ IMNQIGGYES QFIDSVKQEQ EGVYSESLQQ 120 QQQQQPMIYQ NQFQPQTDHI NRPVSTCSSA MDDSLTTMHL PTNLLRQSSS PAGFFAHLDI 180 DNGYPVMRSM DDFRSSRSNV QNSLLTSTKR LKNEMGFSGN SHTSSGILPR IPENEGKIME 240 MKNHLKDEDY VTGYQSGSWD DSDILSDSFL KELEESDHNK LSSLNSSQNQ NDVGRIRAPT 300 TLVHHLSLPT STAELSAMDK LLQFQDSVPL RSRAKRGCAT HPRSIAERVR RTRISERMRK 360 LQELVPNMDK QTNTADMLDL AVDYIKELQK EAESLSDHHA KCICPHKQKL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023729761.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A2J6KPF0 | 0.0 | A0A2J6KPF0_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-55 | bHLH family protein |