PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa018858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 519aa MW: 56315.1 Da PI: 5.334 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.3e-09 | 341 | 389 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Lsa018858 341 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 389 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.85E-11 | 336 | 393 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-17 | 336 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 338 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 339 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-6 | 341 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 344 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MAGEDEIEER NRDDDEQMHY NSTNLSSDWP FNSSSDLTNT SMAMVTSSNP MNNNTPCSSA 60 SMIDSFCHTP PTIWDHNPTN PQNLGAFCDM NLQNNPTTSS SSLGFRKGNL HTPSRNLDMS 120 WPPPNSAIKR GGMFIPPPPA ATSTMLPHTL SQFPADSGFI ERAARLSSFS AGNFEDMINP 180 FGNGPESSLS PYSRPVQEGF VNGFKSTSGE GSKDIPLPVD CDGSQPKNDA RQGGSGFSGN 240 NLPGEAEFSE GGQDDTSNEG LGSKKRRRSD QDTDYNQVKR SPQTPNESTK NNTEIQQMGD 300 KNPNSIANKS SGKHGKQVSQ SSDGQKEEYI HVRARRGQAT NSHSLAERVR REKISERMKF 360 LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDFNL EGLIAKDMLE 420 SRGVPSATLG FGADMAMAYN PSQMAIMQGG ISGLGSSSDA VRRTINSHLM AIGGVYKDPT 480 SQVPSSWDDE LNNIVQMGLN PSSTQNLGST PPSHLKAEP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023748336.1 | 0.0 | transcription factor bHLH49 | ||||
TrEMBL | A0A2J6JIT3 | 0.0 | A0A2J6JIT3_LACSA; Uncharacterized protein | ||||
STRING | XP_010091656.1 | 1e-165 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-103 | bHLH family protein |