PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018858
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 519aa    MW: 56315.1 Da    PI: 5.334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695041PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09341389355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Lsa018858 341 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 389
                58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-11336393No hitNo description
SuperFamilySSF474594.84E-17336407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16339406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6341389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAGEDEIEER NRDDDEQMHY NSTNLSSDWP FNSSSDLTNT SMAMVTSSNP MNNNTPCSSA  60
SMIDSFCHTP PTIWDHNPTN PQNLGAFCDM NLQNNPTTSS SSLGFRKGNL HTPSRNLDMS  120
WPPPNSAIKR GGMFIPPPPA ATSTMLPHTL SQFPADSGFI ERAARLSSFS AGNFEDMINP  180
FGNGPESSLS PYSRPVQEGF VNGFKSTSGE GSKDIPLPVD CDGSQPKNDA RQGGSGFSGN  240
NLPGEAEFSE GGQDDTSNEG LGSKKRRRSD QDTDYNQVKR SPQTPNESTK NNTEIQQMGD  300
KNPNSIANKS SGKHGKQVSQ SSDGQKEEYI HVRARRGQAT NSHSLAERVR REKISERMKF  360
LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDFNL EGLIAKDMLE  420
SRGVPSATLG FGADMAMAYN PSQMAIMQGG ISGLGSSSDA VRRTINSHLM AIGGVYKDPT  480
SQVPSSWDDE LNNIVQMGLN PSSTQNLGST PPSHLKAEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748336.10.0transcription factor bHLH49
TrEMBLA0A2J6JIT30.0A0A2J6JIT3_LACSA; Uncharacterized protein
STRINGXP_010091656.11e-165(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-103bHLH family protein